Attribute Category | Attribute | Target | |
---|
Type of Simulated Data | Genotype at Genetic Markers,
Sex Chromosomes (Requires complex use of features of the model ),
|
---|
Variations | Biallelic Marker,
Multiallelic Marker,
Other (Phenotypes; with user-specified inheritance mechanism),
|
---|
Simulation Method | Forward-time,
|
---|
Input | |
---|
Data Type | Allele Frequencies,
Other (Extensive data on demographic rates),
|
---|
File format | Genepop,
XML (Will be available in version 10.),
Program Specific,
|
---|
Output | |
---|
Data Type | Genotype or Sequence,
Phenotypic Trait,
Individual Relationship (Pedigree information),
Demographic (Extensive reporting of demographic data),
Diversity Measures,
|
---|
Sequencing Reads | |
---|
File Format | Genepop,
Program Specific,
|
---|
Sample Type | Extended or Complete Pedigrees,
|
---|
Phenotype | |
---|
Trait Type | Binary or Qualitative,
Quantitative (Possible, but with sophisticated use of functions in the program),
Multiple,
|
---|
Determinants | Environmental Factors (Possible, but with difficulty),
Gene-Environment Interaction,
|
---|
Evolutionary Features | |
---|
Demographic | |
---|
Population Size Changes | Bottleneck,
Carrying Capacity,
|
---|
Gene Flow | Stepping Stone Models,
Island Models,
Sex or Age-Specific Migration Rates,
Admixed Population,
User-defined Matrix,
|
---|
Spatiality | |
---|
Life Cycle | Age structured,
User-Defined transition matrices,
|
---|
Mating System | Random Mating,
Monogamous,
Polygamous,
Selfing,
Age- or Stage-Specific,
Assortative or Disassortative (With complicated use of program functions),
|
---|
Fecundity | Randomly Distributed,
Individually Determined,
Influenced by Environment,
|
---|
Natural Selection | |
---|
Determinant | Single-locus,
Multi-locus,
Fitness of Offspring,
Phenotypic Trait,
Environmental Factors,
|
---|
Models | Directional Selection,
Multi-locus models,
Epistasis,
Random Fitness Effects,
Disruptive,
Phenotype Threshold,
Frequency-Dependent,
Other (Program is highly flexible. fitness can be defined as any function of genotypes, age, sex, population status),
|
---|
Recombination | |
---|
Mutation Models | k-Allele Model (In version 10),
Infinite-allele Model (In version 10),
|
---|
Events Allowed | Varying Demographic Features,
Population Events,
Varying Genetic Features,
Change of Mating Systems,
|
---|
Other | |
---|
Interface | Command-line,
Graphical User Interface,
|
---|
Development | |
---|
Tested Platforms | Windows,
|
---|
Language | C or C++,
|
---|
License | |
---|
GSR Certification | |
---|