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GSR: Simulator - SUP
The SUP package is not yet public.
| Attribute | Value |
|---|---|
| Title | SUP |
| Short Description | SLINK/FastSLINK utility program |
| Long Description | An extension to SLINK/FastSLINK to allow a larger number of marker loci to be simulated in pedigrees conditional on trait values and in linkage equilibrium or disequilibrium with a trait locus. |
| Version | 110711 |
| Project Started | 2006 |
| Last Release | 12 years, 9 months ago |
| Homepage | http://gaow.github.io/genetic-analysis-software/s/sup/ |
| Citations | Lemire M, SUP: an extension to SLINK to allow a larger number of marker loci to be simulated in pedigrees conditional on trait values., BMC Genet, 07-03-2006 [ Abstract, cited in PMC ] |
| GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, Sex Chromosomes, |
| Variations | Biallelic Marker, Multiallelic Marker, Missing Genotypes, |
| Simulation Method | Gene dropping (Conditional on trait values), |
| Input | |
| Data Type | Allele Frequencies, Empirical, |
| File format | Program Specific (Requires slink output), Other (Linkage), |
| Output | |
| Data Type | Genotype or Sequence, Phenotypic Trait, Individual Relationship, |
| Sequencing Reads | |
| File Format | Linkage, |
| Sample Type | Sibpairs, Trios and Nuclear Families, Extended or Complete Pedigrees, Case-control, |
| Phenotype | |
| Trait Type | Binary or Qualitative, Quantitative, |
| Determinants | Single Genetic Marker, Multiple Genetic Markers, Sex-linked, Gene-Gene Interaction, Environmental Factors, Gene-Environment Interaction, |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | Mac OS X, Linux and Unix, |
| Language | C or C++, |
| License | GNU Public License, |
| GSR Certification |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using SUP has been provided.
Please propose new citations if you are aware of publications that use this software.