SNPsim

Basic Package Attributes
Attribute	Value
Title	SNPsim
Short Description	Coalescent simulation of hotspot recombination
Long Description	SNPsim is a population genetic simulator that generates samples of SNP (Single Nucleotide Polymorphisms) haplotypes and diploid biallelic genotypes. It is based on the coalescent with recombination (Hudson 1983) modified by Wiuf and Posada (2003) to include recombination hotspots. SNPsim also allows for the specification of demographic periods and different mutation models.
Version	0.8
Project Started	2003
Last Release	15 years, 8 months ago
Homepage	http://code.google.com/p/phylosoftware/
Citations	Posada D, Wiuf C, Simulating haplotype blocks in the human genome., Bioinformatics, Jan. 22, 2003 [Abstract, cited in PMC ]
GSR Certification	This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification .

Detailed Attributes
Attribute Category	Attribute
Target
Type of Simulated Data	Genotype at Genetic Markers, Diploid DNA Sequence, Haploid DNA Sequence,
Variations	Biallelic Marker,
Simulation Method	Standard Coalescent,
Input
Data Type
File format	Program Specific,
Output
Data Type	Genotype or Sequence, Individual Relationship,
Sequencing Reads
File Format	Program Specific,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes	Constant Size, Exponential Growth or Decline, User Defined,
Gene Flow
Spatiality
Life Cycle
Mating System	Random Mating,
Fecundity
Natural Selection
Determinant
Models
Recombination	Varying Recombination Rates,
Mutation Models	Two-allele Mutation Model, Infinite-sites Model,
Events Allowed
Other
Interface	Command-line, Script-based,
Development
Tested Platforms	Windows, Mac OS X, Linux and Unix,
Language	C or C++,
License	GNU Public License,
GSR Certification