Basic Package Attributes| Attribute | Value |
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| Title | SMARTPOP |
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| Short Description | Simulating Mating Alliance as a Reproductive Tactic for Populations |
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| Long Description | SMARTPOP is a fast and flexible forward-in-time simulator for population genetics. Specially developed for speed, it is available in a serial and a parallel versions.
Developed for anthropological inference on human populations and eco-anthropological questions, SMARTPOP simulates individuals with sequences of sex-linked DNA (mitochondria, X and Y chromosomes) and autosomes. Studies of social dynamics are enabled using SMARTPOP flexible demographic model and social rules of mating. |
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| Version | 1.0 |
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| Homepage | http://smartpop.sourceforge.net/ |
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| Citations |
Guillot EG, Cox MP, SMARTPOP: inferring the impact of social dynamics on genetic diversity through high speed simulations., BMC Bioinformatics, June 9, 2014
[Abstract, cited in
PMC
]
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| GSR Certification |
This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
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Detailed Attributes| Attribute Category | Attribute | | Target | |
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| Type of Simulated Data | Diploid DNA Sequence,
Haploid DNA Sequence,
Sex Chromosomes,
Mitochondrial DNA,
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| Variations | Single Nucleotide Variation,
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| Simulation Method | Forward-time,
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| Input | |
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| Data Type | Saved simulation,
Other,
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| File format | Program Specific,
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| Output | |
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| Data Type | Genotype or Sequence,
Diversity Measures,
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| Sequencing Reads | Other,
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| File Format | Arlequin,
Fasta or Fastq,
Program Specific,
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| Sample Type | Random or Independent,
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| Phenotype | |
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| Trait Type | |
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| Determinants | |
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| Evolutionary Features | |
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| Demographic | |
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| Population Size Changes | Constant Size,
Exponential Growth or Decline,
Logistic Growth,
Bottleneck,
Carrying Capacity,
User Defined,
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| Gene Flow | |
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| Spatiality | |
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| Life Cycle | Discrete Generation Model,
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| Mating System | Random Mating,
Monogamous,
Polygamous,
Haplodiploid,
Other,
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| Fecundity | Randomly Distributed,
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| Natural Selection | |
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| Determinant | |
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| Models | |
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| Recombination | |
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| Mutation Models | Markov DNA Evolution Models,
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| Events Allowed | Varying Demographic Features,
Population Events,
Change of Mating Systems,
Other,
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| Other | |
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| Interface | Command-line,
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| Development | |
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| Tested Platforms | Windows,
Mac OS X,
Linux and Unix,
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| Language | C or C++,
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| License | GNU Public License,
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| GSR Certification | |
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No example publication using SMARTPOP has been provided.
Please
propose new citations if you are aware of publications that use this software.
