GSR: Simulator - SISSI
Attribute | Value |
---|---|
Title | SISSI |
Short Description | A software tool to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. |
Long Description | Simulating Site-Specific Interactions (SISSI) that simulatesevolution of a nucleotide sequence along a phylogenetic tree incorporating user defined site-specific interactions. Furthermore, our method allows to simulate more complex interactions among nucleotide and other character based sequences |
Version | 1.0 |
Project Started | 2005 |
Last Release | 18 years, 2 months ago |
Homepage | http://www.cibiv.at/software/sissi/ |
Citations | Gesell T, von Haeseler A, In silico sequence evolution with site-specific interactions along phylogenetic trees., Bioinformatics, 03-15-2006 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 10-01-2020 (1268 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Diploid DNA Sequence, Haploid DNA Sequence, RNA, |
Variations | Single Nucleotide Variation, Insertion and Deletion, |
Simulation Method | Phylogenetic, |
Input | |
Data Type | Ancestral Sequence, |
File format | |
Output | |
Data Type | |
Sequencing Reads | |
File Format | Fasta or Fastq, Phylip, Other (Clustal), |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | Codon and Amino Acid Models, Indels and Others, |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | Windows, Mac OS X, Linux and Unix, |
Language | C or C++, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using SISSI has been provided.
Please propose new citations if you are aware of publications that use this software.