GSR: Simulator - simuRare
Attribute | Value |
---|---|
Title | simuRare |
Short Description | Simulating realistic genomic data with rare variants |
Long Description | simuRare is a regression-based resampling method to use real data and simulate rare variants obtained from the 1000 Genomes Project |
Homepage | https://ysph.yale.edu/c2s2/software/simurare/ |
Citations | Xu Y, Wu Y, Song C, Zhang H, Simulating realistic genomic data with rare variants., Genet Epidemiol, 02-01-2013 [ Abstract, cited in PMC ] |
GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Haploid DNA Sequence, |
Variations | Biallelic Marker, Multiallelic Marker, Single Nucleotide Variation, |
Simulation Method | Resample Existing Data, |
Input | |
Data Type | Reference genome, |
File format | |
Output | |
Data Type | Genotype or Sequence, |
Sequencing Reads | |
File Format | Fasta or Fastq, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Script-based, |
Development | |
Tested Platforms | Windows, Linux and Unix, |
Language | R, |
License | |
GSR Certification |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using simuRare has been provided.
Please propose new citations if you are aware of publications that use this software.