Attribute Category | Attribute | Target | |
---|
Type of Simulated Data | Genotype at Genetic Markers,
Diploid DNA Sequence,
Haploid DNA Sequence,
Sex Chromosomes,
Mitochondrial DNA,
|
---|
Variations | Biallelic Marker,
Multiallelic Marker,
Single Nucleotide Variation,
Microsatellite,
|
---|
Simulation Method | Forward-time,
Resample Existing Data,
|
---|
Input | |
---|
Data Type | Saved simulation,
Other (Controlled by script),
|
---|
File format | Fstat,
Genepop,
MS,
Phylip,
|
---|
Output | |
---|
Data Type | Genotype or Sequence,
Phenotypic Trait,
Individual Relationship,
Demographic,
Mutation,
Linkage Disequilibrium,
Diversity Measures,
Fitness,
|
---|
Sequencing Reads | Other (Many stocked or self-defined statistics, including association tests and effective population size),
|
---|
File Format | Fstat,
Genepop,
MS,
Phylip,
STRUCTURE,
Program Specific (Self-defined binary format),
Other (Recipes in cookbook),
|
---|
Sample Type | Random or Independent,
Sibpairs, Trios and Nuclear Families,
Extended or Complete Pedigrees,
Case-control,
Longitudinal,
|
---|
Phenotype | |
---|
Trait Type | Binary or Qualitative,
Quantitative,
Multiple,
|
---|
Determinants | Single Genetic Marker,
Multiple Genetic Markers,
Sex-linked,
Gene-Gene Interaction,
Environmental Factors,
Gene-Environment Interaction,
|
---|
Evolutionary Features | |
---|
Demographic | |
---|
Population Size Changes | Constant Size,
Exponential Growth or Decline,
Bottleneck,
Carrying Capacity,
User Defined,
|
---|
Gene Flow | Stepping Stone Models,
Island Models,
Sex or Age-Specific Migration Rates,
Influenced by Environmental Factors,
Admixed Population,
User-defined Matrix,
|
---|
Spatiality | |
---|
Life Cycle | Discrete Generation Model,
Age structured,
Overlapping Generation,
|
---|
Mating System | Random Mating,
Monogamous,
Polygamous,
Haplodiploid,
Selfing,
Age- or Stage-Specific,
Assortative or Disassortative,
Other (Arbitrary nonrandom mating schemes could be defined),
|
---|
Fecundity | Constant Number,
Randomly Distributed,
Individually Determined,
|
---|
Natural Selection | |
---|
Determinant | Single-locus,
Multi-locus,
Fitness of Offspring,
Phenotypic Trait,
Environmental Factors,
|
---|
Models | Directional Selection,
Balancing Selection,
Multi-locus models,
Epistasis,
Random Fitness Effects,
Disruptive,
Phenotype Threshold,
Frequency-Dependent,
Other (Many others),
|
---|
Recombination | Uniform,
Varying Recombination Rates,
Gene Conversion Allowed,
|
---|
Mutation Models | Two-allele Mutation Model,
Markov DNA Evolution Models,
k-Allele Model,
Stepwise Mutation Model,
Heterogeneity among Sites,
Others (Many other mutation models such as context-sensitive models),
|
---|
Events Allowed | Population Merge and Split,
Varying Demographic Features,
Population Events,
Varying Genetic Features,
Change of Mating Systems,
|
---|
Other | |
---|
Interface | Script-based (Python),
|
---|
Development | |
---|
Tested Platforms | Windows,
Mac OS X,
Linux and Unix,
Solaris,
|
---|
Language | C or C++,
R,
Python,
|
---|
License | GNU Public License (V3),
|
---|
GSR Certification | Accessibility,
Documentation,
Application,
Support,
|
---|