GSR: Simulator - SimSeq
Attribute | Value |
---|---|
Title | SimSeq |
Short Description | An illumina paired-end and mate-pair short read simulator. |
Long Description | This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries . Additionally the program provides the ability to model both site a… |
Project Started | 2012 |
Homepage | https://github.com/jstjohn/SimSeq |
Citations | |
GSR Certification | ✔ Accessibility |
Last evaluated | 04-24-2023 (355 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
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Target | |
Type of Simulated Data | Sequencing Reads, |
Variations | |
Simulation Method | |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | |
Development | |
Tested Platforms | |
Language | |
License | |
GSR Certification | Accessibility, |
Number of Primary Citations: 0
Number of Non-Primary Citations: 0
No example publication using SimSeq has been provided.
Please propose new citations if you are aware of publications that use this software.