GSR: Simulator - simhtsd
The simhtsd package is not yet public.
Attribute | Value |
---|---|
Title | simhtsd |
Short Description | Simulate High-Throughput Sequencing |
Long Description | Given a reference sequence, simhtsd will create a large set of short nucleotide reads, simulating the output from today's high-throughput DNA sequencers, such as the Illumina Genome Analyzer II. |
Project Started | 2009 |
Homepage | https://sourceforge.net/projects/simhtsd/ |
Citations | |
GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Sequencing Reads, |
Variations | |
Simulation Method | |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | Illumina, |
File Format | Fasta or Fastq, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | |
Language | |
License | GNU Public License, |
GSR Certification |
Number of Primary Citations: 0
Number of Non-Primary Citations: 0
No example publication using simhtsd has been provided.
Please propose new citations if you are aware of publications that use this software.