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GSR: Simulator - SimAdapt
| Attribute | Value |
|---|---|
| Title | SimAdapt |
| Short Description | A spatially explicit, individual-based, forward-time, landscape-genetic simulation model combined with a landscape cellular automaton. |
| Long Description | SimAdapt is a spatially explicit, individual-based, forward-time, landscape-genetic simulation model combined with a landscape cellular automaton to represent evolutionary processes of adaptation and population dynamics in changing landscapes, using the NetLogo environment. |
| Version | 20.08 |
| Project Started | 2012 |
| Last Release | 11 years ago |
| Homepage | https://www.openabm.org/model/3137 |
| Citations | Rebaudo F., Le Rouzic A., Dupas S., Silvain J.F., Harry M., Dangles O., SimAdapt: an individual-based genetic model for simulating landscape management impacts on populations, Methods in Ecology and Evolution, 06-01-2013 |
| GSR Certification | ✔ Accessibility |
| Last evaluated | 03-12-2020 (1493 days ago) |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, |
| Variations | Biallelic Marker, Multiallelic Marker, Microsatellite, |
| Simulation Method | Forward-time, Other, |
| Input | |
| Data Type | Allele Frequencies, Other, |
| File format | Fstat, Program Specific, Other, |
| Output | |
| Data Type | Genotype or Sequence, Demographic, Fitness, |
| Sequencing Reads | Other, |
| File Format | Arlequin, Fstat, Genepop, STRUCTURE, Program Specific, Other, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | Multiple Genetic Markers, Sex-linked, Environmental Factors, Gene-Environment Interaction, |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Logistic Growth, User Defined, |
| Gene Flow | Other, |
| Spatiality | |
| Life Cycle | Discrete Generation Model, |
| Mating System | Random Mating, Other, |
| Fecundity | Individually Determined, Influenced by Environment, |
| Natural Selection | |
| Determinant | Multi-locus, Fitness of Offspring, Environmental Factors, |
| Models | Multi-locus models, Other, |
| Recombination | |
| Mutation Models | Stepwise Mutation Model, |
| Events Allowed | Population Merge and Split, Varying Demographic Features, Population Events, Varying Genetic Features, Other, |
| Other | |
| Interface | Command-line, Graphical User Interface, |
| Development | |
| Tested Platforms | Windows, Mac OS X, Linux and Unix, |
| Language | Other, |
| License | |
| GSR Certification | Accessibility, Documentation, Application, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 2
The following 2 publications are selected examples of applications that used SimAdapt.
2019
Qian Tang, Tak Fung, Frank E. Rheindt, ResDisMapper: An r package for fine-scale mapping of resistance to dispersal, Moledular Ecology Resources, 10-03-2019 [Abstract]
Femke J. Pflüger, Johannes Signer, Niko Balkenhol, Habitat loss causes non-linear genetic erosion in specialist species, Global Ecology and Conservation, 01-04-2019 [Abstract]