GSR: Simulator - SimAdapt
Attribute | Value |
---|---|
Title | SimAdapt |
Short Description | A spatially explicit, individual-based, forward-time, landscape-genetic simulation model combined with a landscape cellular automaton. |
Long Description | SimAdapt is a spatially explicit, individual-based, forward-time, landscape-genetic simulation model combined with a landscape cellular automaton to represent evolutionary processes of adaptation and population dynamics in changing landscapes, using the NetLogo environment. |
Version | 20.08 |
Project Started | 2012 |
Last Release | 11 years ago |
Homepage | https://www.openabm.org/model/3137 |
Citations | Rebaudo F., Le Rouzic A., Dupas S., Silvain J.F., Harry M., Dangles O., SimAdapt: an individual-based genetic model for simulating landscape management impacts on populations, Methods in Ecology and Evolution, 06-01-2013 |
GSR Certification | ✔ Accessibility |
Last evaluated | 03-12-2020 (1493 days ago) |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Genotype at Genetic Markers, |
Variations | Biallelic Marker, Multiallelic Marker, Microsatellite, |
Simulation Method | Forward-time, Other, |
Input | |
Data Type | Allele Frequencies, Other, |
File format | Fstat, Program Specific, Other, |
Output | |
Data Type | Genotype or Sequence, Demographic, Fitness, |
Sequencing Reads | Other, |
File Format | Arlequin, Fstat, Genepop, STRUCTURE, Program Specific, Other, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | Multiple Genetic Markers, Sex-linked, Environmental Factors, Gene-Environment Interaction, |
Evolutionary Features | |
Demographic | |
Population Size Changes | Logistic Growth, User Defined, |
Gene Flow | Other, |
Spatiality | |
Life Cycle | Discrete Generation Model, |
Mating System | Random Mating, Other, |
Fecundity | Individually Determined, Influenced by Environment, |
Natural Selection | |
Determinant | Multi-locus, Fitness of Offspring, Environmental Factors, |
Models | Multi-locus models, Other, |
Recombination | |
Mutation Models | Stepwise Mutation Model, |
Events Allowed | Population Merge and Split, Varying Demographic Features, Population Events, Varying Genetic Features, Other, |
Other | |
Interface | Command-line, Graphical User Interface, |
Development | |
Tested Platforms | Windows, Mac OS X, Linux and Unix, |
Language | Other, |
License | |
GSR Certification | Accessibility, Documentation, Application, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 2
The following 2 publications are selected examples of applications that used SimAdapt.
2019
Qian Tang, Tak Fung, Frank E. Rheindt, ResDisMapper: An r package for fine-scale mapping of resistance to dispersal, Moledular Ecology Resources, 10-03-2019 [Abstract]
Femke J. Pflüger, Johannes Signer, Niko Balkenhol, Habitat loss causes non-linear genetic erosion in specialist species, Global Ecology and Conservation, 01-04-2019 [Abstract]