Coalescent simulation of coding DNA sequences with recombination, migration and demography Long Description (required)
Recodon can simulate samples of coding DNA sequences under complex scenarios in which several evolutionary forces can interact simultaneously (namely, recombination, migration and demography). The basic codon model implemented is an extension to the general time-reversible model of nucleotide substitution with a proportion of invariable sites and among-site rate variation. In addition, the program implements non-reversible processes and mixtures of different codon models. https://github.com/MiguelArenas/recodon
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Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 18028540 ],
Arenas M, Posada D ,
Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography. ,
BMC Bioinformatics ,
11-20-2007 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=18028540, Primary Citation