GSR: Simulator - phenosim
Attribute | Value |
---|---|
Title | phenosim |
Short Description | A tool to add phenotypes to simulated genotypes |
Long Description | phenosim reads the output of commonly used coalescent simulators and simulates a phenotype based on a user-defined trait model for each individual. The simulated data can be used to assess the influence of various factors such as demography, genetic architecture or selection on the statistical power of association methods to detect causal genetic variants under a wide variety of population genetic scenarios. |
Version | 0.15 |
Project Started | 2011 |
Last Release | 12 years, 9 months ago |
Homepage | http://evoplant.uni-hohenheim.de/downloads/ |
Citations | Günther T, Gawenda I, Schmid KJ, phenosim--A software to simulate phenotypes for testing in genome-wide association studies., BMC Bioinformatics, 06-29-2011 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 01-23-2020 (1542 days ago) |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | |
Variations | |
Simulation Method | Other (Phenotype-only), |
Input | |
Data Type | |
File format | MS, |
Output | |
Data Type | Genotype or Sequence, Phenotypic Trait, |
Sequencing Reads | |
File Format | Other (Plink, emmax), |
Sample Type | Random or Independent, Case-control, |
Phenotype | |
Trait Type | Binary or Qualitative, Quantitative, Multiple, |
Determinants | Single Genetic Marker, Multiple Genetic Markers, Gene-Gene Interaction, |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | Mac OS X, Linux and Unix, |
Language | Python, |
License | |
GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using phenosim has been provided.
Please propose new citations if you are aware of publications that use this software.