a simulator for long-read sequencers with a novel generative model of quality scores Long Description (required)
PacBio sequencers produced two types of characteristic reads: CCS (short and low error rate) and CLR (long and high error rate), both of which could be useful for de novo assembly of genomes. PBSIM simulates those PacBio reads by using either a model-based or sampling-based simulation. https://github.com/yukiteruono/pbsim2
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
Every sub-attribute is selected Not all sub-attributes are selectedFill Clear Expand Collapse Reset
Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 32976553 ],
Ono Y, Asai K, Hamada M ,
PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores. ,
Bioinformatics ,
05-05-2021 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=32976553, Primary Citation
[Pubmed ID: 37403156 ],
Yang X, Wang X, Zou Y, Zhang S, Xia M, Fu L, Vollger MR, Chen NC, Taylor DJ, Harvey WT, et al. ,
Characterization of large-scale genomic differences in the first complete human genome. ,
Genome Biol ,
07-04-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37403156, , Application
[Pubmed ID: 37621456 ],
Ayad LAK, Chikhi R, Pissis SP ,
Seedability: optimizing alignment parameters for sensitive sequence comparison. ,
Bioinform Adv ,
08-12-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37621456, , Application