Attribute Category | Attribute | Target | |
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Type of Simulated Data | Genotype at Genetic Markers,
Diploid DNA Sequence,
Haploid DNA Sequence,
Mitochondrial DNA,
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Variations | Biallelic Marker,
Multiallelic Marker,
Single Nucleotide Variation,
Microsatellite,
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Simulation Method | Forward-time,
Resample Existing Data,
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Input | |
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Data Type | Allele Frequencies,
Empirical,
Saved simulation,
Other,
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File format | Fstat,
Program Specific,
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Output | |
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Data Type | Genotype or Sequence,
Phenotypic Trait,
Individual Relationship,
Demographic,
Mutation,
Diversity Measures,
Fitness,
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Sequencing Reads | Other (Many built-in statistics, such as f-statistics, demographics, etc, check the manual),
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File Format | Fstat,
Genepop,
PED,
Program Specific,
Other (Space-delimited text files that can be read in excell or r),
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Sample Type | Sibpairs, Trios and Nuclear Families,
Extended or Complete Pedigrees,
Case-control,
Other (Half-sib/full-sib crossing designs),
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Phenotype | |
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Trait Type | Binary or Qualitative,
Quantitative,
Multiple,
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Determinants | Single Genetic Marker,
Multiple Genetic Markers,
Sex-linked (For mitochondrial markers only),
Environmental Factors,
Gene-Environment Interaction,
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Evolutionary Features | |
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Demographic | |
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Population Size Changes | Constant Size,
Exponential Growth or Decline,
Logistic Growth,
Bottleneck,
Carrying Capacity,
User Defined,
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Gene Flow | Stepping Stone Models,
Island Models,
Continent-Island Models,
Sex or Age-Specific Migration Rates,
Influenced by Environmental Factors,
Admixed Population,
User-defined Matrix,
Other (Dispersal as an evolving trait),
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Spatiality | Discrete Models,
Landscape Factors,
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Life Cycle | Discrete Generation Model,
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Mating System | Random Mating,
Monogamous,
Polygamous,
Selfing,
Other (Cloning (no fecundation, no cross-over)),
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Fecundity | Constant Number,
Randomly Distributed,
Individually Determined,
Influenced by Environment,
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Natural Selection | |
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Determinant | Single-locus,
Multi-locus,
Fitness of Offspring,
Phenotypic Trait,
Environmental Factors,
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Models | Directional Selection,
Balancing Selection,
Multi-locus models,
Epistasis (Implicit for quantitative traits),
Random Fitness Effects,
Disruptive,
Other (Multivariate stabilizing selection (gaussian selection)),
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Recombination | Uniform,
Varying Recombination Rates,
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Mutation Models | Two-allele Mutation Model (For all types of traits),
k-Allele Model,
Infinite-allele Model,
Stepwise Mutation Model,
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Events Allowed | Population Merge and Split,
Varying Demographic Features,
Population Events,
Varying Genetic Features,
Change of Mating Systems,
Other (Change of parameter values during the course of a simulation, for instance: change of selection pressures caused by environmental changes),
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Other | Phenogenetic,
Polygenic background,
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Interface | Command-line,
Script-based,
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Development | |
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Tested Platforms | Windows (Including cygwin),
Mac OS X,
Linux and Unix,
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Language | C or C++,
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License | GNU Public License,
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GSR Certification | Accessibility,
Documentation,
Application,
Support,
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