| Attribute Category | Attribute | | Target | |
|---|
| Type of Simulated Data | Genotype at Genetic Markers,
Diploid DNA Sequence,
Haploid DNA Sequence,
Mitochondrial DNA,
|
|---|
| Variations | Biallelic Marker,
Multiallelic Marker,
Single Nucleotide Variation,
Microsatellite,
|
|---|
| Simulation Method | Forward-time,
Resample Existing Data,
|
|---|
| Input | |
|---|
| Data Type | Allele Frequencies,
Empirical,
Saved simulation,
Other,
|
|---|
| File format | Fstat,
Program Specific,
|
|---|
| Output | |
|---|
| Data Type | Genotype or Sequence,
Phenotypic Trait,
Individual Relationship,
Demographic,
Mutation,
Diversity Measures,
Fitness,
|
|---|
| Sequencing Reads | Other (Many built-in statistics, such as f-statistics, demographics, etc, check the manual),
|
|---|
| File Format | Fstat,
Genepop,
PED,
Program Specific,
Other (Space-delimited text files that can be read in excell or r),
|
|---|
| Sample Type | Sibpairs, Trios and Nuclear Families,
Extended or Complete Pedigrees,
Case-control,
Other (Half-sib/full-sib crossing designs),
|
|---|
| Phenotype | |
|---|
| Trait Type | Binary or Qualitative,
Quantitative,
Multiple,
|
|---|
| Determinants | Single Genetic Marker,
Multiple Genetic Markers,
Sex-linked (For mitochondrial markers only),
Environmental Factors,
Gene-Environment Interaction,
|
|---|
| Evolutionary Features | |
|---|
| Demographic | |
|---|
| Population Size Changes | Constant Size,
Exponential Growth or Decline,
Logistic Growth,
Bottleneck,
Carrying Capacity,
User Defined,
|
|---|
| Gene Flow | Stepping Stone Models,
Island Models,
Continent-Island Models,
Sex or Age-Specific Migration Rates,
Influenced by Environmental Factors,
Admixed Population,
User-defined Matrix,
Other (Dispersal as an evolving trait),
|
|---|
| Spatiality | Discrete Models,
Landscape Factors,
|
|---|
| Life Cycle | Discrete Generation Model,
|
|---|
| Mating System | Random Mating,
Monogamous,
Polygamous,
Selfing,
Other (Cloning (no fecundation, no cross-over)),
|
|---|
| Fecundity | Constant Number,
Randomly Distributed,
Individually Determined,
Influenced by Environment,
|
|---|
| Natural Selection | |
|---|
| Determinant | Single-locus,
Multi-locus,
Fitness of Offspring,
Phenotypic Trait,
Environmental Factors,
|
|---|
| Models | Directional Selection,
Balancing Selection,
Multi-locus models,
Epistasis (Implicit for quantitative traits),
Random Fitness Effects,
Disruptive,
Other (Multivariate stabilizing selection (gaussian selection)),
|
|---|
| Recombination | Uniform,
Varying Recombination Rates,
|
|---|
| Mutation Models | Two-allele Mutation Model (For all types of traits),
k-Allele Model,
Infinite-allele Model,
Stepwise Mutation Model,
|
|---|
| Events Allowed | Population Merge and Split,
Varying Demographic Features,
Population Events,
Varying Genetic Features,
Change of Mating Systems,
Other (Change of parameter values during the course of a simulation, for instance: change of selection pressures caused by environmental changes),
|
|---|
| Other | Phenogenetic,
Polygenic background,
|
|---|
| Interface | Command-line,
Script-based,
|
|---|
| Development | |
|---|
| Tested Platforms | Windows (Including cygwin),
Mac OS X,
Linux and Unix,
|
|---|
| Language | C or C++,
|
|---|
| License | GNU Public License,
|
|---|
| GSR Certification | Accessibility,
Documentation,
Application,
Support,
|
|---|
