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GSR: Simulator - MySSP
| Attribute | Value |
|---|---|
| Title | MySSP |
| Short Description | A program for the simulation of DNA sequence evolution across a phylogenetic tree |
| Long Description | MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package. |
| Version | 1.0.3.5 |
| Project Started | 2006 |
| Last Release | 18 years ago |
| Homepage | http://www.rosenberglab.net/software.html |
| Citations | Rosenberg MS, MySSP: non-stationary evolutionary sequence simulation, including indels., Evol Bioinform Online, 02-26-2007 [ Abstract, cited in PMC ] |
| GSR Certification | Accessibility |
| Last evaluated | 03-21-2019 (1850 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Haploid DNA Sequence, |
| Variations | Single Nucleotide Variation, Insertion and Deletion, |
| Simulation Method | Phylogenetic, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | Genotype or Sequence (Including ancestral sequences), |
| Sequencing Reads | |
| File Format | Fasta or Fastq, NEXUS, Other (Mega), |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | Markov DNA Evolution Models, Indels and Others, Heterogeneity among Sites, |
| Events Allowed | |
| Other | |
| Interface | Command-line, Graphical User Interface, |
| Development | |
| Tested Platforms | Windows, Linux and Unix, |
| Language | |
| License | |
| GSR Certification | Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using MySSP has been provided.
Please propose new citations if you are aware of publications that use this software.