msprime

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Title msprime
Short Description A fast and accurate coalescent simulator.
Long Description Msprime is a reimplementation of Hudson’s classical ms program for modern datasets. The Python API and storage format are currently under development and are not fully documented, but the command line interface mspms is reliable and ready for use. This program provides a fully ms compatible interface, and can be used as a drop-in replacement in existing workflows.
Version 0.2.0
Project Started 2015
Last Release 2 years, 9 months ago
Homepagehttps://pypi.python.org/pypi/msprime
Citations Kelleher J, Etheridge AM, McVean G, Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes., PLoS Comput Biol, May 1, 2016 [Abstract, cited in PMC ]
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