Basic Package Attributes| Attribute | Value |
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| Title | mbs |
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| Short Description | modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection |
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| Long Description | A software application to generate samples of DNA sequences when there is a biallelic site targeted by selection. mbs is developed by modifying Hudson's ms. The mbs software is so flexible that it can incorporate any arbitrary histories of population size changes and any mode of selection as long as selection is operating on a biallelic site. |
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| Project Started | 2008 |
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| Last Release | 10 years, 4 months ago |
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| Homepage | http://www.sendou.soken.ac.jp/esb/innan/InnanLab/software.html |
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| Citations |
Teshima KM, Innan H, mbs: modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection., BMC Bioinformatics, May 30, 2009
[Abstract, cited in
PMC
]
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| GSR Certification |
This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
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Recently certified
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
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Detailed Attributes| Attribute Category | Attribute | | Target | |
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| Type of Simulated Data | Haploid DNA Sequence,
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| Variations | Biallelic Marker,
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| Simulation Method | Standard Coalescent,
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| Input | |
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| Data Type | |
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| File format | MS,
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| Output | |
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| Data Type | Genotype or Sequence,
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| Sequencing Reads | |
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| File Format | MS,
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| Sample Type | |
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| Phenotype | |
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| Trait Type | |
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| Determinants | |
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| Evolutionary Features | |
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| Demographic | |
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| Population Size Changes | Exponential Growth or Decline,
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| Gene Flow | Island Models,
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| Spatiality | |
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| Life Cycle | |
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| Mating System | Random Mating,
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| Fecundity | |
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| Natural Selection | |
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| Determinant | |
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| Models | Directional Selection,
Balancing Selection,
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| Recombination | Varying Recombination Rates,
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| Mutation Models | |
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| Events Allowed | Varying Demographic Features,
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| Other | |
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| Interface | Command-line,
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| Development | |
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| Tested Platforms | Mac OS X,
Linux and Unix,
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| Language | C or C++,
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| License | GNU Public License,
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| GSR Certification | |
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No example publication using mbs has been provided.
Please
propose new citations if you are aware of publications that use this software.
