| Title || Mason |
| Short Description || A package for the simulation of nucleotide data. |
| Long Description || Mason is a package for the simulation of nucleotide data. Starting with a genome, you can simulate variants and optionally also methylation levels. From this, reads of different technologies can be simulated, optionally simulating bisulphite treatment. The variants can also be specified as a VCF file.
The result are FASTQ files with the reads and optionally a SAM file with the alignment to the reference sequence.
Substeps of the process are available as standalone tools, e.g. for the simulation of reads from preselected/-simulated fragments, computing of genomic sequences with variants. The time intensive part of read simulation has been parallelized. |
| Project Started || 2010 |
| Last Release || 5 years, 8 months ago |
Holtgrewe, M., Mason – A Read Simulator for Second Generation Sequencing Data, Technical Report FU Berlin, June 1, 2010
This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.