GSR: Simulator - Marlin
Attribute | Value |
---|---|
Title | Marlin |
Short Description | Marlin provides a user-friendly interface for performing forward-in-time population genetic simulations. |
Long Description | Marlin is a program for running spatially explicit forward-in-time population genetic simulations. It provides an intuitive user interface with realistic geographic scenarios can easily be easily created and simulated. But Marlin goes further than that and directly analyses and plots the results. This combination of creation, simulation, and analysis makes Marlin ideal for teaching and for scientists who are interested in doing simulations without having to learn command-line operations. |
Version | 1.6 |
Project Started | 2009 |
Last Release | 12 years, 5 months ago |
Homepage | http://www.patrickmeirmans.com/software/Marlin.html |
Citations | Meirmans PG, MARLIN, software to create, run, and analyse spatially realistic simulations., Mol Ecol Resour, 01-01-2011 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 09-28-2022 (563 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Genotype at Genetic Markers, |
Variations | Biallelic Marker, Multiallelic Marker, Single Nucleotide Variation, Amino acid variation, Microsatellite, |
Simulation Method | Forward-time, |
Input | |
Data Type | |
File format | Program Specific, |
Output | |
Data Type | Genotype or Sequence, Demographic, Diversity Measures, |
Sequencing Reads | |
File Format | Fstat, Program Specific, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | Constant Size, Logistic Growth, Bottleneck, Carrying Capacity, User Defined, |
Gene Flow | Stepping Stone Models, Island Models, Continent-Island Models, Sex or Age-Specific Migration Rates, User-defined Matrix, Other, |
Spatiality | |
Life Cycle | Discrete Generation Model, |
Mating System | Random Mating, Monogamous, Polygamous, Selfing, |
Fecundity | Constant Number, Individually Determined, |
Natural Selection | |
Determinant | |
Models | |
Recombination | Uniform, Varying Recombination Rates, |
Mutation Models | Two-allele Mutation Model, k-Allele Model, Stepwise Mutation Model, Heterogeneity among Sites, |
Events Allowed | |
Other | |
Interface | Graphical User Interface, |
Development | |
Tested Platforms | Mac OS X, |
Language | C or C++, Other, |
License | Other, |
GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using Marlin has been provided.
Please propose new citations if you are aware of publications that use this software.