An official website of the United States government
GSR: Simulator - LDSO
The LDSO package is not yet public.
| Attribute | Value |
|---|---|
| Title | LDSO |
| Short Description | Linkage Disequilibrium with Several Options |
| Long Description | LDSO (Linkage Disequilibrium with Several Options) is a completely self-contained program written in Fortran90. It is a complete computer program for simulations of whole diploid population histories under various historical scenarios based on the gene-dropping method (MacCluer et al. 1986). The random number generator from L'Ecuyer (1996) was used. The genetic history of one or two populations can be simulated; the output files can deliver various statistics (inbreeding rates, allele frequencies, linkage disequilibrium) on these populations for generations wished by the user. Evolutionary forces that are classically found in livestock populations, such as mutation, selection, changes in the population size or random drift, can be taken into account. This allows the simulation of a wide-range of natural or experimental livestock populations, possibly by making use of a real pedigree. A set of parameters has to be provided by the user using simple text files. The possibility of genotyping errors and missing data is also envisaged. |
| Project Started | 2011 |
| Homepage | https://qgsp.jouy.inra.fr/index.php?option=com_content&view=article&id=51&Itemid=56 |
| Citations | |
| GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | |
| Variations | |
| Simulation Method | |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | |
| Language | |
| License | |
| GSR Certification |
Number of Primary Citations: 0
Number of Non-Primary Citations: 0
No example publication using LDSO has been provided.
Please propose new citations if you are aware of publications that use this software.