GSR: Simulator - kernalPop
Attribute | Value |
---|---|
Title | kernalPop |
Short Description | A spatially explicit population genetic simulation engine |
Long Description | Individual-based, spatially explicit models provide a mechanism to understand distributions of individuals on the landscape; however, few models have been coupled with population genetics. The primary benefits of such a combination is to assess performance of populationgenetic estimators in realistic situations. KERNELPOP represents a flexible framework to implement almost any arbitrary population-genetic and demographic model in a spatially explicit context using a variety of dispersal kernels. Estimates of type I error associated with genome scans in metapopulations are provided as an illustration of this software’s utility |
Project Started | 2007 |
Last Release | 14 years, 2 months ago |
Homepage | http://cran.r-project.org/src/contrib/Archive/kernelPop/ |
Citations | Strand AE, Niehaus JM, kernelpop, a spatially explicit population genetic simulation engine, Molecular Ecology Notes, 06-02-2007 [ Abstract ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 01-18-2023 (451 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Genotype at Genetic Markers, |
Variations | Biallelic Marker, |
Simulation Method | Forward-time, |
Input | |
Data Type | |
File format | Arlequin, Genepop, MIGRATE, |
Output | |
Data Type | Genotype or Sequence, Demographic, |
Sequencing Reads | |
File Format | Arlequin, Genepop, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | Carrying Capacity, |
Gene Flow | |
Spatiality | |
Life Cycle | User-Defined transition matrices, |
Mating System | Random Mating, Age- or Stage-Specific, |
Fecundity | Influenced by Environment, |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | Stepwise Mutation Model, Heterogeneity among Sites, |
Events Allowed | Varying Demographic Features, Change of Mating Systems, |
Other | |
Interface | Command-line, Script-based, |
Development | |
Tested Platforms | Windows, Mac OS X, Linux and Unix, |
Language | R, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using kernalPop has been provided.
Please propose new citations if you are aware of publications that use this software.