A powerful and flexible simulator of biological evolution Long Description (required)
INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time. http://abacus.gene.ucl.ac.uk/software/indelible/
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
Every sub-attribute is selected Not all sub-attributes are selectedFill Clear Expand Collapse Reset
Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 19423664 ],
Fletcher W, Yang Z ,
INDELible: a flexible simulator of biological sequence evolution. ,
Mol Biol Evol ,
08-01-2009 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=19423664, Primary Citation
[Pubmed ID: 36932679 ],
Leal JL, Milesi P, Salojärvi J, Lascoux M ,
Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences. ,
Syst Biol ,
06-16-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=36932679, , Application
[Pubmed ID: 37463439 ],
Olabode AS, Mumby MJ, Wild TA, Muñoz-Baena L, Dikeakos JD, Poon AFY ,
Phylogenetic Reconstruction and Functional Characterization of the Ancestral Nef Protein of Primate Lentiviruses. ,
Mol Biol Evol ,
08-03-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37463439, , Application