Basic Package AttributesAttribute | Value |
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Title | Indelible |
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Short Description | A powerful and flexible simulator of biological evolution |
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Long Description | INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time. |
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Version | 1.0.3 |
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Project Started | 2009 |
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Last Release | 8 years, 9 months ago |
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Homepage | http://abacus.gene.ucl.ac.uk/software/indelible/ |
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Citations |
Fletcher W, Yang Z, INDELible: a flexible simulator of biological sequence evolution., Mol Biol Evol, Aug. 1, 2009
[Abstract, cited in
PMC
]
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GSR Certification |
This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
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Recently certified
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
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Detailed AttributesAttribute Category | Attribute | Target | |
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Type of Simulated Data | Haploid DNA Sequence,
Protein Sequence,
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Variations | Biallelic Marker,
Amino acid variation,
Insertion and Deletion,
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Simulation Method | Phylogenetic,
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Input | |
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Data Type | Ancestral Sequence,
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File format | |
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Output | |
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Data Type | Genotype or Sequence,
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Sequencing Reads | |
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File Format | Fasta or Fastq,
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Sample Type | |
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Phenotype | |
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Trait Type | |
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Determinants | |
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Evolutionary Features | |
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Demographic | |
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Population Size Changes | |
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Gene Flow | |
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Spatiality | |
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Life Cycle | |
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Mating System | |
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Fecundity | |
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Natural Selection | |
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Determinant | |
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Models | |
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Recombination | |
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Mutation Models | Codon and Amino Acid Models,
Indels and Others,
Heterogeneity among Sites,
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Events Allowed | |
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Other | |
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Interface | Command-line,
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Development | |
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Tested Platforms | Windows,
Mac OS X,
Linux and Unix,
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Language | C or C++,
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License | Other (Free of charge for academic use),
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GSR Certification | |
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No example publication using Indelible has been provided.
Please
propose new citations if you are aware of publications that use this software.