Basic Package Attributes| Attribute | Value |
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| Title | Indelible |
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| Short Description | A powerful and flexible simulator of biological evolution |
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| Long Description | INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time. |
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| Version | 1.0.3 |
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| Project Started | 2009 |
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| Last Release | 10 years, 2 months ago |
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| Homepage | http://abacus.gene.ucl.ac.uk/software/indelible/ |
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| Citations |
Fletcher W, Yang Z, INDELible: a flexible simulator of biological sequence evolution., Mol Biol Evol, Aug. 1, 2009
[Abstract, cited in
PMC
]
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| GSR Certification |
This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
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Recently certified
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
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Detailed Attributes| Attribute Category | Attribute | | Target | |
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| Type of Simulated Data | Haploid DNA Sequence,
Protein Sequence,
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| Variations | Biallelic Marker,
Amino acid variation,
Insertion and Deletion,
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| Simulation Method | Phylogenetic,
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| Input | |
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| Data Type | Ancestral Sequence,
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| File format | |
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| Output | |
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| Data Type | Genotype or Sequence,
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| Sequencing Reads | |
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| File Format | Fasta or Fastq,
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| Sample Type | |
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| Phenotype | |
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| Trait Type | |
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| Determinants | |
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| Evolutionary Features | |
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| Demographic | |
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| Population Size Changes | |
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| Gene Flow | |
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| Spatiality | |
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| Life Cycle | |
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| Mating System | |
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| Fecundity | |
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| Natural Selection | |
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| Determinant | |
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| Models | |
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| Recombination | |
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| Mutation Models | Codon and Amino Acid Models,
Indels and Others,
Heterogeneity among Sites,
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| Events Allowed | |
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| Other | |
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| Interface | Command-line,
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| Development | |
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| Tested Platforms | Windows,
Mac OS X,
Linux and Unix,
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| Language | C or C++,
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| License | Other (Free of charge for academic use),
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| GSR Certification | |
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No example publication using Indelible has been provided.
Please
propose new citations if you are aware of publications that use this software.
