Basic Package Attributes| Attribute | Value |
|---|
| Title | Indelible |
|---|
| Short Description | A powerful and flexible simulator of biological evolution |
|---|
| Long Description | INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time. |
|---|
| Version | 1.0.3 |
|---|
| Project Started | 2009 |
|---|
| Last Release | 9 years, 1 month ago |
|---|
| Homepage | http://abacus.gene.ucl.ac.uk/software/indelible/ |
|---|
| Citations |
Fletcher W, Yang Z, INDELible: a flexible simulator of biological sequence evolution., Mol Biol Evol, Aug. 1, 2009
[Abstract, cited in
PMC
]
|
|---|
| GSR Certification |
This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
|
|---|
Recently certified
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
|---|
Detailed Attributes| Attribute Category | Attribute | | Target | |
|---|
| Type of Simulated Data | Haploid DNA Sequence,
Protein Sequence,
|
|---|
| Variations | Biallelic Marker,
Amino acid variation,
Insertion and Deletion,
|
|---|
| Simulation Method | Phylogenetic,
|
|---|
| Input | |
|---|
| Data Type | Ancestral Sequence,
|
|---|
| File format | |
|---|
| Output | |
|---|
| Data Type | Genotype or Sequence,
|
|---|
| Sequencing Reads | |
|---|
| File Format | Fasta or Fastq,
|
|---|
| Sample Type | |
|---|
| Phenotype | |
|---|
| Trait Type | |
|---|
| Determinants | |
|---|
| Evolutionary Features | |
|---|
| Demographic | |
|---|
| Population Size Changes | |
|---|
| Gene Flow | |
|---|
| Spatiality | |
|---|
| Life Cycle | |
|---|
| Mating System | |
|---|
| Fecundity | |
|---|
| Natural Selection | |
|---|
| Determinant | |
|---|
| Models | |
|---|
| Recombination | |
|---|
| Mutation Models | Codon and Amino Acid Models,
Indels and Others,
Heterogeneity among Sites,
|
|---|
| Events Allowed | |
|---|
| Other | |
|---|
| Interface | Command-line,
|
|---|
| Development | |
|---|
| Tested Platforms | Windows,
Mac OS X,
Linux and Unix,
|
|---|
| Language | C or C++,
|
|---|
| License | Other (Free of charge for academic use),
|
|---|
| GSR Certification | |
|---|
No example publication using Indelible has been provided.
Please
propose new citations if you are aware of publications that use this software.
