Indelible

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Basic Package Attributes
Attribute	Value
Title	Indelible
Short Description	A powerful and flexible simulator of biological evolution
Long Description	INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time.
Version	1.0.3
Project Started	2009
Last Release	10 years, 4 months ago
Homepage	http://abacus.gene.ucl.ac.uk/software/indelible/
Citations	Fletcher W, Yang Z, INDELible: a flexible simulator of biological sequence evolution., Mol Biol Evol, Aug. 1, 2009 [Abstract, cited in PMC ]
GSR Certification	✔Accessibility ✔Documentation Application Support
Author verification	The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.

Detailed Attributes
Attribute Category	Attribute
Target
Type of Simulated Data	Haploid DNA Sequence, Protein Sequence,
Variations	Biallelic Marker, Amino acid variation, Insertion and Deletion,
Simulation Method	Phylogenetic,
Input
Data Type	Ancestral Sequence,
File format
Output
Data Type	Genotype or Sequence,
Sequencing Reads
File Format	Fasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models	Codon and Amino Acid Models, Indels and Others, Heterogeneity among Sites,
Events Allowed
Other
Interface	Command-line,
Development
Tested Platforms	Windows, Mac OS X, Linux and Unix,
Language	C or C++,
License	GNU Public License,
GSR Certification	Accessibility, Documentation,