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GSR: Simulator - IgSimulator
| Attribute | Value |
|---|---|
| Title | IgSimulator |
| Short Description | a versatile immunosequencing simulator |
| Long Description | IgSimulator is a tool for simulation of antibody repertoire and Ig-seq library. IgSimulator is designed for testing and benchmarking tools for reconstruction of Ig repertoires. |
| Keywords | immunoglobulin repertoire |
| Homepage | http://yana-safonova.github.io/ig_simulator/ |
| Citations | Safonova Y, Lapidus A, Lill J, IgSimulator: a versatile immunosequencing simulator., Bioinformatics, 10-01-2015 [ Abstract, cited in PMC ] |
| GSR Certification | Accessibility |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | |
| Variations | |
| Simulation Method | |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | Linux and Unix, |
| Language | C or C++, |
| License | |
| GSR Certification | Documentation, Application, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 2
The following 2 publications are selected examples of applications that used IgSimulator.
2020
Smakaj E, Babrak L, Ohlin M, Shugay M, Briney B, Tosoni D, Galli C, Grobelsek V, D'Angelo I, Olson B, et al., Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences., Bioinformatics, 03-01-2020 [Abstract]
2019
Zhang Q, Zhang L, Zhou C, Yang Y, Yin Z, Wu D, Tang K, Cao Z, DSab-origin: a novel IGHD sensitive VDJ mapping method and its application on antibody response after influenza vaccination., BMC Bioinformatics, 03-14-2019 [Abstract]