GSR: Simulator - IBDsim
Attribute | Value |
---|---|
Title | IBDsim |
Short Description | IBDSim is a computer package for the simulation of genotypic data under general isolation by distance models. |
Long Description | IBDSim can consider a large panel of subdivided population models representing discrete subpopulations as well as a large continuous population. Many dispersal distributions, with different tails, can be considered as well as various heterogeneities in space and time of the demographic parameters. For examples of various applications see Leblois et al. (2003), Leblois et al. (2004), Leblois et al. (2006), Rousset & Leblois (2007). The program runs on PC under Windows, Mac or Linux systems, and we provide the source code that can be easily compiled under any system using C++ ISO compiler. |
Version | 2.0 |
Project Started | 2011 |
Last Release | 12 years, 1 month ago |
Homepage | http://raphael.leblois.free.fr/ |
Citations | Leblois R, Estoup A, Rousset F, IBDSim: a computer program to simulate genotypic data under isolation by distance., Mol Ecol Resour, 01-01-2009 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 01-24-2019 (1906 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Genotype at Genetic Markers, Diploid DNA Sequence, Haploid DNA Sequence, |
Variations | Biallelic Marker, Multiallelic Marker, Single Nucleotide Variation, Microsatellite, |
Simulation Method | Exact Coalescent, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | Genotype or Sequence, Demographic, Diversity Measures, |
Sequencing Reads | |
File Format | Genepop, MIGRATE, NEXUS, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | Constant Size, Exponential Growth or Decline, Bottleneck, |
Gene Flow | Stepping Stone Models, Island Models, Other (Isolation by distance), |
Spatiality | |
Life Cycle | Discrete Generation Model, |
Mating System | Random Mating, |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | Two-allele Mutation Model, Markov DNA Evolution Models, k-Allele Model, Infinite-allele Model, Infinite-sites Model, Stepwise Mutation Model, Heterogeneity among Sites, Others, |
Events Allowed | Population Merge and Split, Varying Demographic Features, Varying Genetic Features, |
Other | |
Interface | Command-line, Graphical User Interface, |
Development | |
Tested Platforms | Windows, Mac OS X, Linux and Unix, Others, |
Language | C or C++, Python (For interface), |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using IBDsim has been provided.
Please propose new citations if you are aware of publications that use this software.