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GSR: Simulator - HAPSIMU
| Attribute | Value |
|---|---|
| Title | HAPSIMU |
| Short Description | A program that simulates heterogeneous populations with various known and controllable structures under the continuous migration model or the discrete model |
| Long Description | HAPSIMU, a program based on real haplotype data from the HapMap ENCODE project, can simulate heterogeneous populations with various known and controllable structures under the continuous migration model or the discrete model. Moreover, both qualitative and quantitative traits can be simulated using additive genetic model with various genetic parameters designated by users. |
| Version | 1.0 |
| Project Started | 2008 |
| Last Release | 17 years ago |
| Homepage | http://l.web.umkc.edu/liujian/  |
| Citations | Zhang F, Liu J, Chen J, Deng HW, HAPSIMU: a genetic simulation platform for population-based association studies., BMC Bioinformatics, Aug. 5, 2008 [ Abstract, cited in PMC ] |
| GSR Certification | Accessibility |
| Last evaluated | Feb. 6, 2019 (2226 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers |
| Variations | Single Nucleotide Variation |
| Simulation Method | Forward-time (Evolve forward-in-time during population admixture), Resample Existing Data |
| Input | |
| Data Type | Empirical (The hapmap encode project) |
| File format | |
| Output | |
| Data Type | Genotype or Sequence |
| Sequencing Reads | |
| File Format | Other (Admixmap, plink, strat, gx, and eigensoft.) |
| Sample Type | |
| Phenotype | |
| Trait Type | Binary or Qualitative, Quantitative |
| Determinants | Single Genetic Marker, Multiple Genetic Markers |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Constant Size |
| Gene Flow | Admixed Population |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | Uniform |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Graphical User Interface |
| Development | |
| Tested Platforms | Windows |
| Language | C or C++ |
| License | Other (Free for non-commercial usage) |
| GSR Certification | Documentation |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using HAPSIMU has been provided.
Please propose new citations if you are aware of publications that use this software.