HapSim

Recently certified

Basic Package Attributes
Attribute	Value
Title	HapSim
Short Description	A simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients
Long Description	Package for haplotype data simulation. Haplotypes are generated such that their allele frequencies and linkage disequilibrium coefficients match those estimated from an input data set
Version	0.2
Project Started	2005
Last Release	14 years, 1 month ago
Homepage	http://cran.r-project.org/web/packages/hapsim/index.html
Citations	Montana G, HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients., Bioinformatics, Dec. 1, 2005 [Abstract, cited in PMC ]
GSR Certification	✔Accessibility ✔Documentation Application Support
Last evaluated	Jan. 24, 2019 (341 days ago)
Author verification	The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.

Detailed Attributes
Attribute Category	Attribute
Target
Type of Simulated Data	Haploid DNA Sequence (Haplotypes),
Variations	Biallelic Marker,
Simulation Method	Other,
Input
Data Type	Allele Frequencies, Other (Ld information),
File format
Output
Data Type	Genotype or Sequence (Haplotypes),
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface	Command-line (R),
Development
Tested Platforms	Windows, Mac OS X, Linux and Unix, Solaris,
Language	R,
License	GNU Public License,
GSR Certification	Accessibility, Documentation,