Basic Package AttributesAttribute | Value |
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Title | HapSim |
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Short Description | A simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients |
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Long Description | Package for haplotype data simulation. Haplotypes are generated such that their allele frequencies and linkage disequilibrium coefficients match those estimated from an input data set |
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Version | 0.2 |
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Project Started | 2005 |
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Last Release | 14 years ago |
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Homepage | http://cran.r-project.org/web/packages/hapsim/index.html |
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Citations |
Montana G, HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients., Bioinformatics, Dec. 1, 2005
[Abstract, cited in
PMC
]
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GSR Certification | ✔Accessibility ✔Documentation Application Support
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Last evaluated | Jan. 24, 2019 (299 days ago) |
Recently certified
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
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Detailed AttributesAttribute Category | Attribute | Target | |
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Type of Simulated Data | Haploid DNA Sequence (Haplotypes),
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Variations | Biallelic Marker,
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Simulation Method | Other,
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Input | |
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Data Type | Allele Frequencies,
Other (Ld information),
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File format | |
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Output | |
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Data Type | Genotype or Sequence (Haplotypes),
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Sequencing Reads | |
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File Format | |
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Sample Type | |
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Phenotype | |
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Trait Type | |
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Determinants | |
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Evolutionary Features | |
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Demographic | |
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Population Size Changes | |
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Gene Flow | |
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Spatiality | |
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Life Cycle | |
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Mating System | |
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Fecundity | |
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Natural Selection | |
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Determinant | |
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Models | |
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Recombination | |
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Mutation Models | |
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Events Allowed | |
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Other | |
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Interface | Command-line (R),
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Development | |
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Tested Platforms | Windows,
Mac OS X,
Linux and Unix,
Solaris,
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Language | R,
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License | GNU Public License,
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GSR Certification | Accessibility,
Documentation,
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No example publication using HapSim has been provided.
Please
propose new citations if you are aware of publications that use this software.