GSR: Simulator - GeneArtisan
The GeneArtisan package is not yet public.
Attribute | Value |
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Title | GeneArtisan |
Short Description | Simulation of Markers in Case-Control Study Designs |
Long Description | GeneArtisan: Simulation of Markers in Case-Control Study Designs Version 1.1 Release Date 22 May 2005. Note: This release implements an improved algorithm for simulating samples that allows larger intervals to be used and dramatically improves execution time. Check this page for updates and bug reports. Reference: Y. Wang and B. Rannala. 2005. In Silico Analysis of Disease-Association Mapping Strategies Using the Coalescent Process and Incorporating Ascertainment and Selection. American Journal of Human Genetics 76:1066-1073. Program Support: Questions about general issues/problems using this program can be directed to ygwang@ucdavis.edu . |
Version | 1.1 |
Project Started | 2005 |
Last Release | 18 years, 10 months ago |
Homepage | http://www.rannala.org/?page_id=241 |
Citations | Wang Y, Rannala B, In silico analysis of disease-association mapping strategies using the coalescent process and incorporating ascertainment and selection., Am J Hum Genet, 06-01-2005 [ Abstract, cited in PMC ] |
GSR Certification | This package has been evaluated. No certificates were awarded at this time. |
Last evaluated | 07-26-2018 (2067 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
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Target | |
Type of Simulated Data | Genotype at Genetic Markers, |
Variations | Biallelic Marker, Single Nucleotide Variation, |
Simulation Method | Exact Coalescent, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | Genotype or Sequence, |
Sequencing Reads | |
File Format | |
Sample Type | Case-control, |
Phenotype | |
Trait Type | Binary or Qualitative, |
Determinants | Single Genetic Marker, |
Evolutionary Features | |
Demographic | |
Population Size Changes | Constant Size, Exponential Growth or Decline, |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | Random Mating, |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | Varying Recombination Rates, |
Mutation Models | Stepwise Mutation Model, |
Events Allowed | |
Other | |
Interface | Command-line, Graphical User Interface, |
Development | |
Tested Platforms | Windows, Mac OS X, Linux and Unix, |
Language | C or C++, |
License | GNU Public License, |
GSR Certification |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using GeneArtisan has been provided.
Please propose new citations if you are aware of publications that use this software.