GSR: Simulator - fwdpp
Attribute | Value |
---|---|
Title | fwdpp |
Short Description | A C++ template library for implementing efficient forward simulations. |
Long Description | Fwdpp is a C++11 library intended to help implement forward-time population genetic simulations. |
Version | 0.2.5 |
Project Started | 2014 |
Last Release | 9 years, 4 months ago |
Homepage | https://github.com/molpopgen/fwdpp |
Citations | Thornton KR, A C++ Template Library for Efficient Forward-Time Population Genetic Simulation of Large Populations., Genetics, 06-20-2014 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 11-10-2017 (2346 days ago) |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | |
Variations | |
Simulation Method | Standard Coalescent, Exact Coalescent, Forward-time, Resample Existing Data, Phylogenetic, Gene dropping, Other, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | |
Development | |
Tested Platforms | |
Language | |
License | |
GSR Certification | Accessibility, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 6
The following 6 publications are selected examples of applications that used fwdpp.
2017
Sanjak JS, Long AD, Thornton KR, A Model of Compound Heterozygous, Loss-of-Function Alleles Is Broadly Consistent with Observations from Complex-Disease GWAS Datasets., PLoS Genet, 01-01-2017 [Abstract]
Schrider DR, Kern AD, Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome., Mol Biol Evol, 08-01-2017 [Abstract]
Zhou Y, Massonnet M, Sanjak JS, Cantu D, Gaut BS, Evolutionary genomics of grape (<i>Vitis vinifera</i> ssp. <i>vinifera</i>) domestication., Proc Natl Acad Sci U S A, 10-31-2017 [Abstract]
2016
Beissinger TM, Wang L, Crosby K, Durvasula A, Hufford MB, Ross-Ibarra J, Recent demography drives changes in linked selection across the maize genome., Nat Plants, 06-13-2016 [Abstract]
2014
Baldwin-Brown JG, Long AD, Thornton KR, The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms., Mol Biol Evol, 04-01-2014 [Abstract]
2013
Thornton KR, Foran AJ, Long AD, Properties and modeling of GWAS when complex disease risk is due to non-complementing, deleterious mutations in genes of large effect., PLoS Genet, 01-01-2013 [Abstract]