Forward-in-time simulation of Recombination, Quantitative Traits, and Selection Long Description (required)
forqs is a forward-in-time population genetics simulation that tracks individual haplotype chunks as they recombine each generation. forqs also also models quantitative traits and selection on those traits.
forqs is implemented as a command-line C++ program, using a modular design that gives the user great flexibility in creating custom simulations. It is freely available with a permissive BSD license. https://bitbucket.org/dkessner/forqs dkessner@ucla.edu
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
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Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 24336146 ],
Kessner D, Novembre J ,
forqs: forward-in-time simulation of recombination, quantitative traits and selection. ,
Bioinformatics ,
02-15-2014 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=24336146, Primary Citation
[Pubmed ID: 34367575 ],
Frayer ME, Payseur BA ,
Demographic history shapes genomic ancestry in hybrid zones. ,
Ecol Evol ,
07-05-2021 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=34367575, , Application
[Pubmed ID: 37506266 ],
Drury AL, Gout JF, Dapper AL ,
Modeling Recombination Rate as a Quantitative Trait Reveals New Insight into Selection in Humans. ,
Genome Biol Evol ,
08-01-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37506266, , Application