FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragment size and grouped by GC content across a genome to model new genomes in FASTA format while tracking applied mutations for use in analysis Long Description (required)
FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragment size and grouped by GC content across a genome to model new genomes in FASTA format while tracking applied mutations for use in analysis tools or population simulations.
FIGG uses Apache MapReduce and HBase to rapidly generate individual genomes and allow users to scale up generation to fit specific project needs. http://insilicogenome.sourceforge.net/
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
Every sub-attribute is selected Not all sub-attributes are selectedFill Clear Expand Collapse Reset
Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 24885193 ],
Killcoyne S, del Sol A ,
FIGG: simulating populations of whole genome sequences for heterogeneous data analyses. ,
BMC Bioinformatics ,
05-19-2014 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=24885193, Primary Citation