GSR: Simulator - FIGG
Attribute | Value |
---|---|
Title | FIGG |
Short Description | FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragment size and grouped by GC content across a genome to model new genomes in FASTA format while tracking applied mutations for use in analysis |
Long Description | FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragment size and grouped by GC content across a genome to model new genomes in FASTA format while tracking applied mutations for use in analysis tools or population simulations. FIGG uses Apache MapReduce and HBase to rapidly generate individual genomes and allow users to scale up generation to fit specific project needs. |
Version | 1.1 |
Project Started | 2013 |
Last Release | 9 years, 11 months ago |
Homepage | http://insilicogenome.sourceforge.net/ |
Citations | Killcoyne S, del Sol A, FIGG: simulating populations of whole genome sequences for heterogeneous data analyses., BMC Bioinformatics, 05-19-2014 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 05-03-2018 (2150 days ago) |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Haploid DNA Sequence, |
Variations | Biallelic Marker, |
Simulation Method | Other, |
Input | |
Data Type | Other, |
File format | |
Output | |
Data Type | Genotype or Sequence, |
Sequencing Reads | |
File Format | Fasta or Fastq, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | Linux and Unix, |
Language | Java, |
License | Other, |
GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using FIGG has been provided.
Please propose new citations if you are aware of publications that use this software.