A simulation test bed for hypotheses of genome evolution Long Description (required)
EvolSimulator is a program that allows the simulation of evolution at the level of genes, gene families, and whole genomes. It was designed with the goal of investigating evolutionary phenomena like biased mutation regimes in different lineages, complicated patterns of selective pressure across sequences, and the confounding effects of paralogy and lateral genetic transfer. http://bioinformatics.org.au/tools/evolsim/
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
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Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 17267425 ],
Beiko RG, Charlebois RL ,
A simulation test bed for hypotheses of genome evolution. ,
Bioinformatics ,
04-01-2007 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=17267425, Primary Citation
[Pubmed ID: 28673025 ],
Bernard G, Chan CX, Chan YB, Chua XY, Cong Y, Hogan JM, Maetschke SR, Ragan MA ,
Alignment-free inference of hierarchical and reticulate phylogenomic relationships. ,
Brief Bioinform ,
03-22-2019 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28673025, , Application
[Pubmed ID: 31345254 ],
Zielezinski A, Girgis HZ, Bernard G, Leimeister CA, Tang K, Dencker T, Lau AK, Röhling S, Choi JJ, Waterman MS, et al. ,
Benchmarking of alignment-free sequence comparison methods. ,
Genome Biol ,
07-25-2019 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=31345254, , Application