GSR: Simulator - DWGSIM
Attribute | Value |
---|---|
Title | DWGSIM |
Short Description | Whole Genome Simulator for Next-Generation Sequencing |
Long Description | Whole genome simulation can be performed with dwgsim. dwgsim is based off of wgsim found in SAMtools written by Heng Li, and forked from DNAA. It was modified to handle ABI SOLiD and Ion Torrent data, as well as various assumptions about aligners and positions of indels. Many new features have been subsequently added. |
Version | 0.1.12 |
Project Started | 2011 |
Last Release | 6 years, 9 months ago |
Homepage | https://github.com/nh13/DWGSIM |
Citations | |
GSR Certification | ✔ Accessibility |
Last evaluated | 06-14-2018 (2108 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | |
Variations | Single Nucleotide Variation, Insertion and Deletion, |
Simulation Method | Other, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | Illumina, SOLiD, IonTorrent, |
File Format | Fasta or Fastq, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | |
Language | C or C++, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 0
Number of Non-Primary Citations: 0
No example publication using DWGSIM has been provided.
Please propose new citations if you are aware of publications that use this software.