GSR: Simulator - DHOEM
Attribute | Value |
---|---|
Title | DHOEM |
Short Description | a statistical simulation software for simulating new markers in real SNP marker data |
Long Description | A simulation tool named DHOEM (densification of haplotypes by loess regression and maximum likelihood) which is free from population assumptions and simulates new markers in real SNP marker data. The main objective of DHOEM is to generate a new population, which incorporates real and simulated SNP by statistical learning from an initial population, which match the realized features of the latter. |
Project Started | 2015 |
Last Release | 7 years, 7 months ago |
Homepage | http://dhoem.sourceforge.net/ |
Citations | Jacquin L, Cao TV, Grenier C, Ahmadi N, DHOEM: a statistical simulation software for simulating new markers in real SNP marker data., BMC Bioinformatics, 12-03-2015 [ Abstract, cited in PMC ] |
GSR Certification | This package has been evaluated. No certificates were awarded at this time. |
Last evaluated | 07-11-2019 (1716 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Genotype at Genetic Markers, |
Variations | Biallelic Marker, |
Simulation Method | Resample Existing Data, Other, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | Windows, |
Language | R, |
License | |
GSR Certification |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using DHOEM has been provided.
Please propose new citations if you are aware of publications that use this software.