GSR: Simulator - CoalFace
The CoalFace package is not yet public.
Attribute | Value |
---|---|
Title | CoalFace |
Short Description | CoalFace is a simulation of the coalescent process with the visual display of gene genealogies. |
Long Description | CoalFace has been developed predominantly as a teaching tool, yet some basic coalescent simulation analyses can be performed. Both Windows and Linux (Intel) executables are available. |
Version | 0.2b |
Project Started | 2004 |
Last Release | 19 years, 10 months ago |
Homepage | http://web.up.ac.za/default.asp?ipkCategoryID=3283 |
Citations | Delport W, coalface: a graphical user interface program for the simulation of coalescence, Molecular Ecology Notes, 08-25-2005 [ Abstract ] |
GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Haploid DNA Sequence, |
Variations | Biallelic Marker, Microsatellite, |
Simulation Method | Standard Coalescent, |
Input | |
Data Type | |
File format | Arlequin, |
Output | |
Data Type | Genotype or Sequence, Phenotypic Trait, |
Sequencing Reads | |
File Format | Arlequin, Other, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | Constant Size, Exponential Growth or Decline, Bottleneck, |
Gene Flow | Continent-Island Models, |
Spatiality | |
Life Cycle | |
Mating System | Random Mating, |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | Markov DNA Evolution Models, Stepwise Mutation Model, Indels and Others (Sequence (jukes cantor, felsenstein 81, jimura 2, hky85), |
Events Allowed | Population Merge and Split, |
Other | |
Interface | Command-line, Graphical User Interface, |
Development | |
Tested Platforms | Windows, Linux and Unix, |
Language | Other (Delphi), |
License | GNU Public License, |
GSR Certification |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using CoalFace has been provided.
Please propose new citations if you are aware of publications that use this software.