GSR: Simulator - CoalFace

The CoalFace package is not yet public.

Basic Package Attributes
AttributeValue
Title CoalFace
Short Description CoalFace is a simulation of the coalescent process with the visual display of gene genealogies.
Long Description CoalFace has been developed predominantly as a teaching tool, yet some basic coalescent simulation analyses can be performed. Both Windows and Linux (Intel) executables are available.
Version 0.2b
Project Started 2004
Last Release 19 years, 10 months ago
Homepagehttp://web.up.ac.za/default.asp?ipkCategoryID=3283
Citations Delport W, coalface: a graphical user interface program for the simulation of coalescence, Molecular Ecology Notes, 08-25-2005 [ Abstract ]
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence,
VariationsBiallelic Marker, Microsatellite,
Simulation MethodStandard Coalescent,
Input
Data Type
File formatArlequin,
Output
Data TypeGenotype or Sequence, Phenotypic Trait,
Sequencing Reads
File FormatArlequin, Other,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size ChangesConstant Size, Exponential Growth or Decline, Bottleneck,
Gene FlowContinent-Island Models,
Spatiality
Life Cycle
Mating SystemRandom Mating,
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation ModelsMarkov DNA Evolution Models, Stepwise Mutation Model, Indels and Others (Sequence (jukes cantor, felsenstein 81, jimura 2, hky85),
Events AllowedPopulation Merge and Split,
Other
InterfaceCommand-line, Graphical User Interface,
Development
Tested PlatformsWindows, Linux and Unix,
LanguageOther (Delphi),
LicenseGNU Public License,
GSR Certification

Number of Primary Citations: 1

Number of Non-Primary Citations: 0

No example publication using CoalFace has been provided.

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