GSR: Simulator - BaySICS
Attribute | Value |
---|---|
Title | BaySICS |
Short Description | An integral platform with a graphical interface for statistical inference based on approximate Bayesian computation. |
Long Description | BaySICS is made of five programs accessible from the same graphical interface. The first program performs coalescent simulations and create reference tables containing summary statistics from simulated DNA alignments. The second and third programs perform post-simulation analysis employing the reference tables and obtain parameters estimations or model choice (hypothesis contrasts) respectively. The fourth and fifth programs perform validation procedures for assessing the statistical power as well as the robustness of the inference by means of pseudo-observed datasets. BaySICS was designed for be user-friendly and for optimizing studies of ancient DNA. |
Version | 1.9 |
Project Started | 2015 |
Last Release | 9 years, 1 month ago |
Homepage | https://sites.google.com/site/baysicsabc/ |
Citations | Edson Sandoval-Castellanos, Eleftheria Palkopoulou, Love Dalén, Back to BaySICS: A User-Friendly Program for Bayesian Statistical Inference from Coalescent Simulations, PLoS ONE, 04-27-2014 |
GSR Certification | Accessibility |
Last evaluated | 03-08-2018 (2100 days ago) |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Diploid DNA Sequence, Haploid DNA Sequence, Sex Chromosomes, Mitochondrial DNA, |
Variations | |
Simulation Method | Standard Coalescent, |
Input | |
Data Type | Empirical, |
File format | Program Specific, Other, |
Output | |
Data Type | Genotype or Sequence, Demographic, Diversity Measures, |
Sequencing Reads | Other, |
File Format | Arlequin, Fasta or Fastq, Program Specific, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | Constant Size, Exponential Growth or Decline, Logistic Growth, Bottleneck, Carrying Capacity, User Defined, |
Gene Flow | Stepping Stone Models, Island Models, Continent-Island Models, Sex or Age-Specific Migration Rates, Influenced by Environmental Factors, Admixed Population, User-defined Matrix, Other, |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | Heterogeneity among Sites, |
Events Allowed | |
Other | |
Interface | Graphical User Interface, |
Development | |
Tested Platforms | Windows, |
Language | Other, |
License | |
GSR Certification | Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using BaySICS has been provided.
Please propose new citations if you are aware of publications that use this software.