[Pubmed ID: 22199392],
Huang W, Li L, Myers JR, Marth GT,
ART: a next-generation sequencing read simulator.,
Bioinformatics,
02-15-2012,
https://www.ncbi.nlm.nih.gov/pubmed/?term=22199392,Primary Citation
[Pubmed ID: 23558742],
Liao Y, Smyth GK, Shi W,
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.,
Nucleic Acids Res,
05-01-2013,
https://www.ncbi.nlm.nih.gov/pubmed/?term=23558742,, Application
[Pubmed ID: 24142950],
Zhang J, Kobert K, Flouri T, Stamatakis A,
PEAR: a fast and accurate Illumina Paired-End reAd mergeR.,
Bioinformatics,
03-01-2014,
https://www.ncbi.nlm.nih.gov/pubmed/?term=24142950,, Application
[Pubmed ID: 27576524],
Sessegolo C, Burlet N, Haudry A,
Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies.,
Biol Lett,
08-01-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27576524,, Application
[Pubmed ID: 27756224],
Hutchinson S, Glover L, Horn D,
High-resolution analysis of multi-copy variant surface glycoprotein gene expression sites in African trypanosomes.,
BMC Genomics,
10-18-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27756224,, Application
[Pubmed ID: 27806686],
Faksri K, Xia E, Tan JH, Teo YY, Ong RT,
In silico region of difference (RD) analysis of Mycobacterium tuberculosis complex from sequence reads using RD-Analyzer.,
BMC Genomics,
11-02-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27806686,, Application
[Pubmed ID: 27843713],
DeMaere MZ, Darling AE,
Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C).,
PeerJ,
11-08-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27843713,, Application
[Pubmed ID: 27998267],
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B,
acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data.,
BMC Bioinformatics,
12-20-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27998267,, Application