GSR: Simulator - HaploSIm

AttributeValue
Title HaploSIm
Short Description Functions to simulate haplotypes
Long Description Simulate haplotypes through meioses. Allows specification of population parameters.
Project Started 2013
Homepagehttp://cran.r-project.org/web/packages/HaploSim/index.html
Citations Teo YY, Small KS, A novel method for haplotype clustering and visualization., Genet Epidemiol, 01-01-2010 [ Abstract, cited in PMC ]
GSR Certification

✔ Accessibility
✔ Documentation
Application
Support

Last evaluated05-15-2023 (334 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers,
Variations
Simulation Method
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceScript-based,
Development
Tested PlatformsWindows, Mac OS X, Linux and Unix,
LanguageR,
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation,

Number of Primary Citations: 1

Number of Non-Primary Citations: 0

No example publication using HaploSIm has been provided.

Please propose new citations if you are aware of publications that use this software.


Propose changes to this simulator