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GSR: Simulator - ArtificialFastqGenerator
| Attribute | Value |
|---|---|
| Title | ArtificialFastqGenerator |
| Short Description | Ouputs artificial FASTQ files derived from a reference genome. |
| Long Description | Ouputs artificial FASTQ files derived from a reference genome. |
| Homepage | https://sourceforge.net/projects/artfastqgen/ |
| Citations | Frampton M, Houlston R, Generation of artificial FASTQ files to evaluate the performance of next-generation sequencing pipelines., PLoS One, 01-01-2012 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | 02-28-2023 (410 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Haploid DNA Sequence, |
| Variations | |
| Simulation Method | Resample Existing Data, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | Illumina, |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | |
| Language | Java, |
| License | GNU Public License, |
| GSR Certification | Accessibility, Documentation, Application, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 3
The following 3 publications are selected examples of applications that used ArtificialFastqGenerator.
2022
Shea J, Smith C, Halse TA, Kohlerschmidt D, Rourke AK, Musser KA, Escuyer V, Lapierre P, Novel Mycobacterium tuberculosis Complex Genotype Related to M. caprae., Emerg Infect Dis, 07-01-2022 [Abstract]
Matuszewska M, Murray GGR, Ba X, Wood R, Holmes MA, Weinert LA, Stable antibiotic resistance and rapid human adaptation in livestock-associated MRSA., Elife, 06-28-2022 [Abstract]
2021
Lorente-Leal V, Farrell D, Romero B, Álvarez J, de Juan L, Gordon SV, Performance and Agreement Between WGS Variant Calling Pipelines Used for Bovine Tuberculosis Control: Toward International Standardization., Front Vet Sci, 12-14-2021 [Abstract]