GSR: Simulator - 454sim
Attribute | Value |
---|---|
Title | 454sim |
Short Description | Simulate 454-data using configurable statistical models at high speed |
Long Description | Simulate 454-data using configurable statistical models at high speed |
Homepage | https://sourceforge.net/projects/bioinfo-454sim/ |
Citations | Lysholm F, Andersson B, Persson B, An efficient simulator of 454 data using configurable statistical models., BMC Res Notes, 10-26-2011 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 01-18-2023 (324 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Sequencing Reads, |
Variations | |
Simulation Method | Resample Existing Data, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | Roche 454, |
File Format | Fasta or Fastq, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | |
Development | |
Tested Platforms | Windows, Mac OS X, Linux and Unix, |
Language | C or C++, |
License | |
GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using 454sim has been provided.
Please propose new citations if you are aware of publications that use this software.