GSR: Simulator - RNA Seq Simulator
Attribute | Value |
---|---|
Title | RNA Seq Simulator |
Short Description | RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets. |
Long Description | RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets. |
Project Started | 2011 |
Last Release | 12 years, 8 months ago |
Homepage | https://github.com/HuntsmanCancerInstitute/USeq |
Citations | |
GSR Certification | ✔ Accessibility |
Last evaluated | 02-26-2020 (1508 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | RNA, |
Variations | |
Simulation Method | |
Input | |
Data Type | |
File format | |
Output | |
Data Type | Genotype or Sequence, |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | Mac OS X, Linux and Unix, |
Language | Java, R, |
License | BSD, |
GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 0
Number of Non-Primary Citations: 0
No example publication using RNA Seq Simulator has been provided.
Please propose new citations if you are aware of publications that use this software.