C++/Python library for population genetics. Long Description (required)
FFPopSim is a C++ and Python library to simulate large populations that are polymorphic at many loci. It allows for complex fitness functions, including pairwise and higher order epistasis. It is designed to study the effects of linked selection, the rare processes in large populations, and can be used to address a large variety of population genetics problems. http://webdav.tuebingen.mpg.de/ffpopsim/
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
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Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 23097421 ],
Zanini F, Neher RA ,
FFPopSim: an efficient forward simulation package for the evolution of large populations. ,
Bioinformatics ,
12-15-2012 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=23097421, Primary Citation
[Pubmed ID: 35532122 ],
Stolyarova AV, Neretina TV, Zvyagina EA, Fedotova AV, Kondrashov AS, Bazykin GA ,
Complex fitness landscape shapes variation in a hyperpolymorphic species. ,
Elife ,
05-09-2022 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=35532122, , Application
[Pubmed ID: 37040332 ],
Latorre SM, Were VM, Foster AJ, Langner T, Malmgren A, Harant A, Asuke S, Reyes-Avila S, Gupta DR, Jensen C, et al. ,
Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus. ,
PLoS Biol ,
04-11-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37040332, , Application